BtaEX6101325 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017913 | BUB3
Description
Bos taurus budding uninhibited by benzimidazoles 3 homolog (yeast) (BUB3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076177]
Coordinates
chr26:43276923-43279005:+
Coord C1 exon
chr26:43276923-43276970
Coord A exon
chr26:43277510-43277704
Coord C2 exon
chr26:43278936-43279005
Length
195 bp
Sequences
Splice sites
3' ss Seq
ACCAGGCCCTTGTTCCCTAGATG
3' ss Score
7.59
5' ss Seq
TACGTAGGT
5' ss Score
4.81
Exon sequences
Seq C1 exon
GAGCGGCGGCGGGCGCGGCGGCTGAGTTGCTTCTGAACGGAGCCCGAG
Seq A exon
ATGACCGGTTCTAACGAGTTCAAACTGAACCAACCCCCCGAGGACGGCATCTCCTCAGTGAAGTTCAGCCCCAACACATCGCAGTTCCTGCTGGTCTCCTCCTGGGACACGTCCGTGCGCCTCTATGATGTGCCGGCCAACTCCATGCGGCTCAAGTACCAGCACACCGGCGCCGTCCTGGACTGCGCCTTCTAC
Seq C2 exon
GATCCAACACATGCCTGGAGTGGGGGATTAGACCATCAGTTGAAAATGCATGATTTGAACACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017913-'1-4,'1-1,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.246 C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTTGCTTCTGAACGGA
R:
CTTGATCAGTGTTCAAATCATGCA
Band lengths:
98-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]