MmuEX6014701 @ mm10
Exon Skipping
Gene
ENSMUSG00000066979 | Bub3
Description
BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463]
Coordinates
chr7:131560222-131561606:+
Coord C1 exon
chr7:131560222-131560454
Coord A exon
chr7:131560710-131560904
Coord C2 exon
chr7:131561537-131561606
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTAGCGTTTTGTTCTACAGATG
3' ss Score
9.76
5' ss Seq
TACGTAGGT
5' ss Score
4.81
Exon sequences
Seq C1 exon
GGGGGGGGGAAACGCGGCTTCCCTTTGAGCCGGAACAGGATGACTGCGGAAAATGAGGCAAGCAGTAAATCAGACCAATCAGCTGCCGAGATCGAGCCGTTGGCGTTCAAAATCAGCCAATGATAGGCCTGCTCCGGAGCTTCCTCTCCGCCTTCTCCGCTTTGCCTGCGAGTGCTCGGAGGGAAGCGGATCGGTAGTGGCCGGTGCAGAAACGTTGCTTAGGCGGACAGGAG
Seq A exon
ATGACCGGTTCGAACGAATTCAAGCTGAACCAGCCACCCGAGGATGGCATCTCCTCGGTTAAGTTCAGCCCCAACACATCCCAGTTCCTCCTGGTCTCCTCCTGGGATACGTCTGTGCGCCTCTACGATGTGCCCGCCAATTCCATGAGGCTCAAGTACCAGCACACTGGTGCTGTCCTGGACTGCGCCTTCTAC
Seq C2 exon
GATCCAACGCATGCCTGGAGTGGTGGATTAGATCATCAACTGAAAATGCACGATTTGAACACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066979-'0-2,'0-1,4-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.246 C2=0.092
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCTTTGAGCCGGAACAG
R:
TCTAATCCACCACTCCAGGCA
Band lengths:
248-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types