MmuEX6014701 @ mm9
Exon Skipping
Gene
ENSMUSG00000066979 | Bub3
Description
budding uninhibited by benzimidazoles 3 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1343463]
Coordinates
chr7:138703905-138705120:+
Coord C1 exon
chr7:138703905-138703968
Coord A exon
chr7:138704224-138704418
Coord C2 exon
chr7:138705051-138705120
Length
195 bp
Sequences
Splice sites
3' ss Seq
CTTAGCGTTTTGTTCTACAGATG
3' ss Score
9.76
5' ss Seq
TACGTAGGT
5' ss Score
4.81
Exon sequences
Seq C1 exon
GAGTGCTCGGAGGGAAGCGGATCGGTAGTGGCCGGTGCAGAAACGTTGCTTAGGCGGACAGGAG
Seq A exon
ATGACCGGTTCGAACGAATTCAAGCTGAACCAGCCACCCGAGGATGGCATCTCCTCGGTTAAGTTCAGCCCCAACACATCCCAGTTCCTCCTGGTCTCCTCCTGGGATACGTCTGTGCGCCTCTACGATGTGCCCGCCAATTCCATGAGGCTCAAGTACCAGCACACTGGTGCTGTCCTGGACTGCGCCTTCTAC
Seq C2 exon
GATCCAACGCATGCCTGGAGTGGTGGATTAGATCATCAACTGAAAATGCACGATTTGAACACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066979-'3-1,'3-0,6-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.246 C2=0.083
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=53.8),PF0040027=WD40=PU(47.2=26.2)
C2:
PF0040027=WD40=PD(47.2=70.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCGGAGGGAAGCG
R:
TGATCAGTGTTCAAATCGTGCA
Band lengths:
132-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: