HsaEX0008720 @ hg19
Exon Skipping
Gene
ENSG00000154473 | BUB3
Description
budding uninhibited by benzimidazoles 3 homolog (yeast) [Source:HGNC Symbol;Acc:1151]
Coordinates
chr10:124913793-124915243:+
Coord C1 exon
chr10:124913793-124914001
Coord A exon
chr10:124914434-124914628
Coord C2 exon
chr10:124915174-124915243
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTGGGCGCCTGTTCTGCAGATG
3' ss Score
8.12
5' ss Seq
TACGTAGGT
5' ss Score
4.81
Exon sequences
Seq C1 exon
GGGTTGACCGATGCTGGGCAGCTGAGCGGACCAATCGGCCCCCTAGACTGAGACGTTGGCGTTTGAAATCAGCCAATGGCAGGTCTACACTGGAGCTTCCTCTCCGCCTCCTTCGCCTAGCCTGCGAGTGTTCTGAGGGAAGCAAGGAGGCGGCGGCGGCCGCAGCGAGTGGCGAGTAGTGGAAACGTTGCTTCTGAGGGGAGCCCAAG
Seq A exon
ATGACCGGTTCTAACGAGTTCAAGCTGAACCAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCCCCAACACCTCCCAGTTCCTGCTTGTCTCCTCCTGGGACACGTCCGTGCGTCTCTACGATGTGCCGGCCAACTCCATGCGGCTCAAGTACCAGCACACCGGCGCCGTCCTGGACTGCGCCTTCTAC
Seq C2 exon
GATCCAACGCATGCCTGGAGTGGAGGACTAGATCATCAATTGAAAATGCATGATTTGAACACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154473-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.246 C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGACCGATGCTGGG
R:
ATCTAGTCCTCCACTCCAGGC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)