GgaEX1011479 @ galGal4
Exon Skipping
Gene
ENSGALG00000009681 | BUB3
Description
mitotic checkpoint protein BUB3 [Source:RefSeq peptide;Acc:NP_001006506]
Coordinates
chr6:31024414-31027415:+
Coord C1 exon
chr6:31024414-31024522
Coord A exon
chr6:31026319-31026513
Coord C2 exon
chr6:31027346-31027415
Length
195 bp
Sequences
Splice sites
3' ss Seq
CATTTGTGCTCTGTTGTCAGATG
3' ss Score
7.74
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
ACAGGACTCTCCGGGACCGGGCTGCCTTCCTCCCCCGCGCTGCTGCGTGAAGAACGTTTCTCCTTGGTGTGGCCTCGAGAGAGGGAAGAAGCCGTGTACTATGAAAACG
Seq A exon
ATGACGGGATCAAACGAGTTCAAACTCAATCAAACTCCAGATGATGGGATTTCATCGGTCAAGTTCAGTCCAAATACCTCTCAGTTTCTGCTTGTTTCATCCTGGGACACTACAGTCCGTCTCTATGATGTTCCTGCCAACAGCATGAGACTCAAATATCAACATTCAGGAGCTGTCCTTGACTGTGCTTTTTAT
Seq C2 exon
GACCCTACCCATGCATGGAGTGGAGGATTAGATCAGCAGTTGAAAATGCATGATCTAAACACGGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009681-'4-4,'4-2,5-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.123 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
PF0040027=WD40=WD(100=55.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGACTCTCCGGGACCG
R:
CTTGGTCCGTGTTTAGATCATGC
Band lengths:
178-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]