RnoEX0015522 @ rn6
Exon Skipping
Gene
ENSRNOG00000020643 | Bub3
Description
BUB3 mitotic checkpoint protein [Source:RGD Symbol;Acc:1306654]
Coordinates
chr1:203526932-203528073:+
Coord C1 exon
chr1:203526932-203527148
Coord A exon
chr1:203527182-203527376
Coord C2 exon
chr1:203528004-203528073
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTTAGCGTTTGTTCTACAGATG
3' ss Score
8.17
5' ss Seq
TACGTAGGT
5' ss Score
4.81
Exon sequences
Seq C1 exon
GGCGAAGGTGGGCGGAGCGGGATTCGTGGCCTGCGGCCGGCGCGTCGATGCACAGAGGGGTTCGGTCGAGGTCCATTGTGTTCTATTTGGGGATCTGCGGGCAAGGAAGGAGGCCAGGCCCGGTGGAGCTCGGCGGTAGCGGGATGGCGGCCGGCCTGGATCAAGGCGGGCCCGCGCGCTGCGCAGGCGCAGGTCCTGGCCCGCCTCTGTTGCTCCG
Seq A exon
ATGACCGGTTCGAATGAATTCAAGCTGAACCAGCCACCCGAGGATGGCATCTCCTCGGTTAAGTTCAGCCCCAACACCTCCCAGTTCCTCCTGGTCTCCTCCTGGGATACGTCCGTGCGCCTCTACGATGTGCCCGCCAATTCCATGAGGCTCAAGTACCAGCACACTGGTGCTGTCCTGGACTGCGCCTTCTAC
Seq C2 exon
GATCCAACACATGCCTGGAGTGGAGGACTAGATCATCAACTGAAAATGCATGATTTGAATACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020643_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.246 C2=0.139
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGGATTCGTGGCCT
R:
TTGATGATCTAGTCCTCCACTCCA
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]