HsaEX0008720 @ hg38
Exon Skipping
Gene
ENSG00000154473 | BUB3
Description
BUB3, mitotic checkpoint protein [Source:HGNC Symbol;Acc:HGNC:1151]
Coordinates
chr10:123154277-123155727:+
Coord C1 exon
chr10:123154277-123154485
Coord A exon
chr10:123154918-123155112
Coord C2 exon
chr10:123155658-123155727
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCTGGGCGCCTGTTCTGCAGATG
3' ss Score
8.12
5' ss Seq
TACGTAGGT
5' ss Score
4.81
Exon sequences
Seq C1 exon
GGGTTGACCGATGCTGGGCAGCTGAGCGGACCAATCGGCCCCCTAGACTGAGACGTTGGCGTTTGAAATCAGCCAATGGCAGGTCTACACTGGAGCTTCCTCTCCGCCTCCTTCGCCTAGCCTGCGAGTGTTCTGAGGGAAGCAAGGAGGCGGCGGCGGCCGCAGCGAGTGGCGAGTAGTGGAAACGTTGCTTCTGAGGGGAGCCCAAG
Seq A exon
ATGACCGGTTCTAACGAGTTCAAGCTGAACCAGCCACCCGAGGATGGCATCTCCTCCGTGAAGTTCAGCCCCAACACCTCCCAGTTCCTGCTTGTCTCCTCCTGGGACACGTCCGTGCGTCTCTACGATGTGCCGGCCAACTCCATGCGGCTCAAGTACCAGCACACCGGCGCCGTCCTGGACTGCGCCTTCTAC
Seq C2 exon
GATCCAACGCATGCCTGGAGTGGAGGACTAGATCATCAATTGAAAATGCATGATTTGAACACTGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154473_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.246 C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=52.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGACCGATGCTGGG
R:
ATCTAGTCCTCCACTCCAGGC
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development