BtaEX6102841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011865 | MTA2
Description
Bos taurus metastasis associated 1 family, member 2 (MTA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001075712]
Coordinates
chr29:41640350-41641154:-
Coord C1 exon
chr29:41641037-41641154
Coord A exon
chr29:41640656-41640758
Coord C2 exon
chr29:41640350-41640449
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACCACTTCCCCACTCCCCAGGAG
3' ss Score
9.34
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GACTGCTTTTTTTACTCACTGGTGTTTGACCCTATGCAGAAGACACTTCTAGCTGATCAGGGAGAGATCCGAGTTGGTTGCAAATACCAAGCTGAGATCCCAGATCGCCTGGCAGAGG
Seq A exon
GAGAATCTGATAATCGGAACCAACAGAAGATGGAGATGAAAGTCTGGGATCCAGACAACCCTCTCACAGACCGGCAGATTGATCAGTTTCTCGTGGTGGCCCG
Seq C2 exon
AGCTGTGGGGACCTTTGCAAGAGCCCTAGATTGCAGCAGTTCCATTCGGCAGCCAAGCCTGCACATGAGTGCAGCCGCTGCCTCCCGAGATATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011865-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.075 A=0.143 C2=0.353
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTACTCACTGGTGTTTGACCCT
R:
CAGGGTGATATCTCGGGAGGC
Band lengths:
210-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]