DreEX6004250 @ danRer10
Exon Skipping
Gene
ENSDARG00000013031 | mta2
Description
metastasis associated 1 family, member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4803]
Coordinates
chr7:17678957-17681229:+
Coord C1 exon
chr7:17678957-17679074
Coord A exon
chr7:17680927-17681029
Coord C2 exon
chr7:17681130-17681229
Length
103 bp
Sequences
Splice sites
3' ss Seq
CAATATTTTCCATCTCTTAGTTG
3' ss Score
5.38
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GACTGTTTCTTCTACTCTCTGGTGTTTGACCCAGTGCAGAAAACACTGCTGGCTGACCAGGGGGAGATCAGAGTCGGATCTAAATACCAGGCAGAGATTCCGGACAAACTGGCTGAAG
Seq A exon
TTGAAGCAGACAGTCGCGTTCAGGAGAAGCTTGAGACAAAGGTCTGGGATCCAAACAACCAGCTGAAGGATCCACAGATAGACCAATTCCTGGTAGTGGCACG
Seq C2 exon
GGCTGTTGGAACATTTGCACGTGCACTAGACTGCAGCAGTTCCATCCGCCAGCCTAGTCTGCACATGAGCGCAGCGGCAGCATCTAGAGACATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013031-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTTTCTTCTACTCTCTGGTGT
R:
CAGTGTGATGTCTCTAGATGCTGC
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]