GgaEX1037277 @ galGal3
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4071906-4075566:-
Coord C1 exon
chr8:4075449-4075566
Coord A exon
chr8:4073831-4073933
Coord C2 exon
chr8:4071906-4072005
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTAACTTGTTTTTCAACCAGGTG
3' ss Score
8.97
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATTTCTTCTTCTATTCACTAGTATATGATCCTCAACAAAAGACTCTACTCGCTGATAAAGGAGAAATTCGAGTTGGAAACAGATACCAGGCAGATATAACGGACTTATTAAAAGAGG
Seq A exon
GTGAGGATGATGGAAGAGATCAGTCAAAACTTGAAACAAAAGTTTGGGAAGCCTTTAACCCGCTAGTAGACAAGCAGATAGACCAGTTCTTGGTGGTAGCACG
Seq C2 exon
GTCCGTTGGTACATTTGCCCGAGCACTAGATTGCAGTAGTTCTGTCAGACAGCCAAGTTTGCACATGAGTGCTGCAGCAGCCTCTAGGGACATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803-'16-16,'16-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.167 A=0.219 C2=0.373
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.3=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGATCCTCAACAAAAGACTCTACT
R:
CAGTGTGATGTCCCTAGAGGC
Band lengths:
194-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]