DreEX6055574 @ danRer10
Exon Skipping
Gene
ENSDARG00000007198 | mta1
Description
metastasis associated 1 [Source:ZFIN;Acc:ZDB-GENE-131121-353]
Coordinates
chr17:37637340-37642762:+
Coord C1 exon
chr17:37637340-37637457
Coord A exon
chr17:37642345-37642447
Coord C2 exon
chr17:37642663-37642762
Length
103 bp
Sequences
Splice sites
3' ss Seq
TGTGGGTGTTGGTTTGCCAGGAG
3' ss Score
6.07
5' ss Seq
TCGGTAAAA
5' ss Score
5.48
Exon sequences
Seq C1 exon
GATGCCTTTTTCTACTCGCTGGTGTACGACCCACAGCAAAAGACTCTGCTGGCTGATAAGGGAGAGATCAGAGTGGGAAACAAGTACCAGGCTGACATCACTGACCTCCTCAAAGAGG
Seq A exon
GAGAGGAGGATGATCGGGAGCTGGAGAAACTGGAGGAGAAGGTGTGGGATCCCAGCAACCCCCTCACCGAGAAACAGATCGACCAGTTCCTCGTCGTGGCTCG
Seq C2 exon
GTCTGTGGGCACGTTTGCGCGGGCTCTAGACTGCAGCAGTTCAGTTCGGCAGCCCAGTCTGCACATGAGCGCTGCAGCAGCCTCCAGAGATATCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007198-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.382
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.2=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCTTTTTCTACTCGCTGGT
R:
CAGTGTGATATCTCTGGAGGCTG
Band lengths:
218-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]