MmuEX7007638 @ mm10
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113123117-113127714:+
Coord C1 exon
chr12:113123117-113123234
Coord A exon
chr12:113126775-113126877
Coord C2 exon
chr12:113127615-113127714
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCCACATTTGTTCCCTGTAGGTG
3' ss Score
10.01
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTCCTGGCTGATAAAGGGGAAATTCGTGTAGGAAACCGGTACCAGGCTGACATCACTGACTTGCTGAAAGAAG
Seq A exon
GTGAGGAGGACGGCCGCGATCAGTCAAAACTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTGGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
Seq C2 exon
CTCTGTGGGTACCTTTGCACGGGCCCTGGATTGCAGCAGCTCCGTGCGGCAGCCTAGCCTGCACATGAGTGCCGCAGCGGCCTCCCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-'13-17,'13-13,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.030 A=0.161 C2=0.230
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(11.8=46.3),PF0144819=ELM2=PU(32.7=43.9)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTACTCTCTAGTCTACGACCCA
R:
CAGGGTGATGTCTCGGGAGG
Band lengths:
210-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types