GgaEX1037277 @ galGal4
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4000715-4049943:-
Coord C1 exon
chr8:4049850-4049943
Coord A exon
chr8:4035480-4035582
Coord C2 exon
chr8:4000715-4000866
Length
103 bp
Sequences
Splice sites
3' ss Seq
CTAACTTGTTTTTCAACCAGGTG
3' ss Score
8.97
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACCGCCAATGGAAATGTGGAAGCAAAGGTGGTGTGTTTCTACAGAAGAAGAGACATTTCAAGCACACTTATTGTATTGGCAGATAAACATGCAA
Seq A exon
GTGAGGATGATGGAAGAGATCAGTCAAAACTTGAAACAAAAGTTTGGGAAGCCTTTAACCCGCTAGTAGACAAGCAGATAGACCAGTTCTTGGTGGTAGCACG
Seq C2 exon
GGACCAAGCCGAAACTTGCTGCTCAATGGGAAATCATACCCAACAAAAGTCCGATTAATTCGTGGTGGATCCATGCCTCCAGTGAAAAGGAGGAGGATGAACTGGATTGATGCACCAGATGATGTTTTCTACATGGCCACTGAAGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803_MULTIEX1-4/16=C1-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(19.5=100)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCAATGGAAATGTGGAA
R:
TGGTTTCTTCAGTGGCCATGT
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]