BtaEX6079079 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71361333-71365811:+
Coord C1 exon
chr21:71361333-71361450
Coord A exon
chr21:71364962-71365064
Coord C2 exon
chr21:71365712-71365811
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCGGCACCCCTTCTCCGCAGGCG
3' ss Score
8.05
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GACTTCTTCTTCTACTCTCTGGTCTACGACCCCCAGCAGAAGACCCTCCTGGCAGACAAAGGGGAGATCCGGGTGGGGAACCGGTACCAGGCGGACATCACCGACTTGCTGAAAGAAG
Seq A exon
GCGAGGAGGACGGCCGAGACCAGTCCAAGCTGGAGACCAAGGTGTGGGAGGCCCGCAACCCACTCGTGGACAAGCAGATTGACCAGTTCCTTGTGGTGGCCCG
Seq C2 exon
CTCTGTGGGCACCTTTGCCCGGGCCCTGGACTGCAGCAGCTCCGTCCGGCAGCCCAGCCTGCACATGAGCGCCGCGGCCGCCTCCCGGGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.133 C2=0.338
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(12.1=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTTCTTCTACTCTCTGGTCT
R:
CTCATGTGCAGGCTGGGC
Band lengths:
186-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]