RnoEX6029998 @ rn6
Exon Skipping
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137935890-137940076:+
Coord C1 exon
chr6:137935890-137936007
Coord A exon
chr6:137939014-137939116
Coord C2 exon
chr6:137939977-137940076
Length
103 bp
Sequences
Splice sites
3' ss Seq
ACTACACTTGTTCCCCATAGGTG
3' ss Score
9.98
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GATTTCTTCTTCTACTCTCTAGTCTACGACCCACAGCAGAAGACCCTCCTGGCTGATAAAGGCGAAATTCGTGTAGGGAACCGGTACCAGGCTGACATCACTGATTTGCTGAAAGACG
Seq A exon
GTGAGGAGGACGGCCGCGATCAGTCGAAGCTGGAGACCAAGGTGTGGGAAGCCCACAATCCACTTGTAGATAAGCAGATTGACCAGTTTCTGGTGGTGGCCCG
Seq C2 exon
CTCTGTGGGTACCTTTGCACGGGCCCTGGATTGCAGCAGCTCCGTGCGGCAGCCTAGCCTGCACATGAGTGCCGCCGCAGCCTCCCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711-'6-11,'6-9,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(12.2=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTACTCTCTAGTCTACGACCCA
R:
CAGGGTGATGTCTCGGGAGG
Band lengths:
210-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]