HsaEX6073268 @ hg38
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105454193-105460457:+
Coord C1 exon
chr14:105454193-105454310
Coord A exon
chr14:105458270-105458372
Coord C2 exon
chr14:105460358-105460457
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCCACACTTCCTCCCTGTAGGCG
3' ss Score
9.54
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GATTTCTTCTTCTATTCTCTAGTCTACGACCCACAGCAGAAGACCCTGCTGGCAGATAAAGGAGAGATTCGAGTAGGAAACCGGTACCAGGCAGACATCACCGACTTGTTAAAAGAAG
Seq A exon
GCGAGGAGGATGGCCGAGACCAGTCCAGGTTGGAGACCCAGGTGTGGGAGGCGCACAACCCACTCACAGACAAGCAGATCGACCAGTTCCTGGTGGTGGCCCG
Seq C2 exon
CTCTGTGGGCACCTTCGCACGGGCCCTGGACTGCAGCAGCTCCGTCCGACAGCCCAGCCTGCACATGAGCGCCGCAGCTGCCTCCCGAGACATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979-'18-35,'18-33,23-35
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.113 A=0.067 C2=0.465
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(11.8=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTATTCTCTAGTCTACGACCCA
R:
CAGGGTGATGTCTCGGGAGG
Band lengths:
211-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains