HsaEX6002405 @ hg38
Exon Skipping
Gene
ENSG00000149480 | MTA2
Description
metastasis associated 1 family member 2 [Source:HGNC Symbol;Acc:HGNC:7411]
Coordinates
chr11:62597316-62598141:-
Coord C1 exon
chr11:62598024-62598141
Coord A exon
chr11:62597610-62597712
Coord C2 exon
chr11:62597316-62597415
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCCATTGTTCTTTTCCCCAGGAG
3' ss Score
10.27
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GACTGCTTTTTTTACTCACTGGTGTTTGACCCCGTGCAGAAGACACTTCTCGCTGATCAGGGCGAGATTAGAGTTGGTTGCAAATACCAAGCTGAGATCCCAGATCGCCTAGTAGAGG
Seq A exon
GAGAATCTGATAATCGGAACCAGCAGAAGATGGAGATGAAGGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATCGACCAGTTTCTTGTGGTGGCCCG
Seq C2 exon
AGCTGTGGGAACCTTTGCAAGAGCCCTAGATTGTAGCAGCTCCATTCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCCTCCCGAGATATCACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149480-'16-14,'16-12,19-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.150 A=0.094 C2=0.539
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTACTCACTGGTGTTTGACCC
R:
CAGAGTGATATCTCGGGAGGCA
Band lengths:
210-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains