RnoEX6006509 @ rn6
Exon Skipping
Gene
ENSRNOG00000019913 | Mta2
Description
metastasis associated 1 family, member 2 [Source:RGD Symbol;Acc:1306743]
Coordinates
chr1:225144797-225145572:+
Coord C1 exon
chr1:225144797-225144914
Coord A exon
chr1:225145187-225145289
Coord C2 exon
chr1:225145473-225145572
Length
103 bp
Sequences
Splice sites
3' ss Seq
GCCATCGCTTGCTTCCTCAGGAG
3' ss Score
8.31
5' ss Seq
CCGGTGAGG
5' ss Score
9.35
Exon sequences
Seq C1 exon
GACTGCTTTTTTTACTCACTGGTGTTCGACCCTGTGCAGAAGACACTTCTGGCTGATCAAGGGGAGATCAGAGTTGGTTGCAAATTCCAAGCTGAGATCCCAGATCGTTTGGCAGAGG
Seq A exon
GAGAATCGGATAATCGAAACCAACAGAAGATGGAGATGAAAGTCTGGGACCCAGACAACCCTCTCACAGACCGGCAGATCGATCAGTTTCTCGTGGTGGCCCG
Seq C2 exon
AGCCGTGGGAACCTTTGCCAGAGCCCTAGACTGCAGCAGCTCAATCCGGCAGCCAAGCTTGCACATGAGTGCAGCTGCTGCGTCCCGAGATATCACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019913-'12-12,'12-9,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=PD(13.5=47.5),PF0144819=ELM2=PU(30.9=42.5)
A:
PF0144819=ELM2=FE(61.8=100)
C2:
PF0144819=ELM2=PD(5.5=8.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCACTGGTGTTCGACCCT
R:
CAGCAGCTGCACTCATGTG
Band lengths:
186-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]