BtaEX6107179 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003275 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr27:36297971-36300495:-
Coord C1 exon
chr27:36300417-36300495
Coord A exon
chr27:36298281-36298378
Coord C2 exon
chr27:36297971-36298195
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCGCCCTGTCCCCAGGTG
3' ss Score
12.7
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GGTAGAATCTCCAGCCATCCCGCGGATTCCCTGCGTCACACCTGAGACAGTGGTGATCAGAGCCGATGAGCCAGATCAG
Seq A exon
GTGTCCAAAGAGTATGATGAAGACTCTCTGATCCCCAGCAGCCCGGCCACAGAGACCTCGGACAACATCAGCCCTGTAGCCAGCCCGGTGCACACGGG
Seq C2 exon
GTTCCTGGTGAGCTTCATGGTGGACGCCCGCGGGGGCTCCATGCGGGGCAGCCGGCACAACGGCCTGAGGGTGGTGGTCCCGCCGCGGACGTGCGCAGCGCCCACCCGCATCACCTGCCGCCTGGTGAAGCCCCAGAAGCTGCCCACGCCGCCGCCGCTGGCCGAGGAGGAGGGCCTGGCCAGCAGGGTCATCGCGCTGGGGCCCACGGGGGTCCAGTTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003275-'25-31,'25-30,26-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.426 A=0.788 C2=0.355
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=3.0)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTGATCAGAGCCGATGA
R:
AGCTTCTGGGGCTTCACCAG
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]