GgaEX1065914 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2622354-2623099:-
Coord C1 exon
chr22:2622952-2623099
Coord A exon
chr22:2622658-2622755
Coord C2 exon
chr22:2622354-2622578
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTTCCCTGCCTTTGCACAGCCC
3' ss Score
7.62
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGAGGAATCTGCAGCTGTCCCACAGGTCCCCTGCGTGCCCCCTGAGACTGTGGTGACCATAGCAGAGGAGTCTGAGCAGATGGGACCTGTGGAGACTGAGGCTGAGCAAGGCGGCCTGCTGCCTGCACCCTCGGTGTCCCCACAGGAG
Seq A exon
CCCTCCAAGGAGTTCGATGAGGACTCCTTGATTCCCAGCAGCCCGGCCACCGAAACCTCGGACAACATCAGCCCCGTGGCCAGCCCCGTTCACACAGG
Seq C2 exon
GTTCCTGGTGAGCTTCATGGTGGATGCGCGTGGCGGCTCCATGCGGGGCAGCCGGCACCACGGGCTGCGCGTGGTCATCCCTCCCCGTGCCTGTGCTGCACCCACCCGCATCACTTGCCGCCTGGTGAAGCCTCAGAAGCTGCCTGCCCCCCCACCGCTGGCTGAGGAGGAGGGCCTGGCAAGCCGCATCATTGCACTGGGGCCCGCTGGCGCCCAGTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX2-5/14=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.818 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=3.0)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATCTGCAGCTGTCCCAC
R:
GCATCCACCATGAAGCTCACC
Band lengths:
172-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]