HsaEX6080539 @ hg19
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41553881-41555639:-
Coord C1 exon
chr8:41555561-41555639
Coord A exon
chr8:41554194-41554291
Coord C2 exon
chr8:41553881-41554105
Length
98 bp
Sequences
Splice sites
3' ss Seq
GACCCTTTCTCTCTCCTCAGGCA
3' ss Score
12.06
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGTGGAATCTCCAGCCATCCCCAGGATTCCCTGTGCCATGCCTGAGACAGTGGTGATCAGGTCAGAAGAGCAGGAGCAG
Seq A exon
GCATCTAAAGAGTATGATGAGGACTCCCTCATCCCCAGCAGCCCGGCCACCGAGACCTCAGACAACATCAGCCCGGTGGCCAGCCCGGTGCATACAGG
Seq C2 exon
GTTTCTGGTGAGCTTCATGGTTGACGCCCGGGGTGGTTCCATGAGAGGAAGTCGCCACAACGGCCTGCGAGTGGTGATCCCGCCACGGACGTGCGCAGCGCCCACCCGCATCACCTGCCGCCTGGTCAAGCCCCAGAAGCTCAGCACGCCGCCCCCACTGGCCGAGGAGGAGGGCCTGGCCAGCAGGATCATAGCACTGGGGCCCACGGGGGCACAGTTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'26-30,'26-29,28-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.753 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=3.0)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTCAGAAGAGCAGGAGC
R:
CTGAGCTTCTGGGGCTTGAC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)