MmuEX6034895 @ mm9
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:24222282-24224642:+
Coord C1 exon
chr8:24222282-24222360
Coord A exon
chr8:24224236-24224333
Coord C2 exon
chr8:24224418-24224642
Length
98 bp
Sequences
Splice sites
3' ss Seq
AGGCCCTTTCTCTTCTGCAGGCA
3' ss Score
9.4
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGTGGAGTCTCCAGCCATCCCAAGGATCCCTTGTGTCACACCTGAGACCGTTGTGATCCGATCTGAAGATCAGGAACAA
Seq A exon
GCATCTAAAGAATATGATGAGGATTCCCTCATTCCCAGCAGCCCGGCCACAGAGACCTCAGACAACATTAGCCCTGTGGCTAGCCCGGTCCACACAGG
Seq C2 exon
GTTCCTGGTGAGCTTCATGGTGGATGCCCGAGGGGGATCCATGAGAGGAAGCCGTCATAATGGCCTCAGGGTGGTGATCCCTCCCCGGACATGCGCAGCACCCACTCGCATCACCTGCCGCCTCGTTAAGCCGCAGAAGCTGAACACGCCACCCCCACTGGCTGAGGAAGAGGGCCTAGCCAGCAGGATCATTGCCCTGGGACCCACGGGGGCCCAGTTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'27-33,'27-32,28-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.758 C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=3.0)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGAGACCGTTGTGATCC
R:
CAGCTTCTGCGGCTTAACGAG
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: