DreEX0000377 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68211518-68270435:-
Coord C1 exon
chr5:68270340-68270435
Coord A exon
chr5:68212123-68212238
Coord C2 exon
chr5:68211518-68211742
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCATGTGTTTATGTACAGCAG
3' ss Score
5.01
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
Exon sequences
Seq C1 exon
AGATAGAGTAACACTGGAAAACACTGAGGTAGAAATAGAGAGAAAGAAAGAGAGAGAGGCTGAGCCGGGATGCCAACCAACACCATCCTTTTTGGA
Seq A exon
CAGCACACTCCACTTCCATTGCCCAAAGAGTACGACGAGGATTCTCTGATTCCCAGCAGTCCTGCAACTGAGACTTCAGACAATGTCAGTCCGGTTGCCAGTCCCATCCACACCGG
Seq C2 exon
TTTTCTGGTGAGCTTCATGGTGGATGCTCGCGGCGGCTCGATGCGCGGCAGCAGACACAACGGCCTCCGCGTCATCATTCCTCCTCGAACCTGCGCCGCTCCCACACGCATCACCTGCCGCCTGGTGAAGCCCCAGAAGCTGCCCACACCGCCGCCATTAGTGGAGGGAGAGGGTCTCGCCAGCCGCATCATCTCCCTTGGACCCGCCAGCATGCAGTTTTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093_MULTIEX2-25/28=C1-26
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.797 C2=0.224
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(5.6=44.4)
A:
PF0079115=ZU5=PU(1.0=2.5)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
ENSDART00000161561fB27
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCAACCAACACCATCCT
R:
CTAAAAACTGCATGCTGGCGG
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]