RnoEX6055942 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73771211-73773223:-
Coord C1 exon
chr16:73773145-73773223
Coord A exon
chr16:73771519-73771616
Coord C2 exon
chr16:73771211-73771435
Length
98 bp
Sequences
Splice sites
3' ss Seq
GGCCCTCTTCTCTCCTGCAGGCA
3' ss Score
11.73
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGTGGAATCCCCAGCCATCCCAAGGATCCCTTGTGTCACGCCTGAGACTGTTGTGATCCGATCCGAAGATCAGGAACAA
Seq A exon
GCATCTAAAGAGTATGATGAGGACTCACTCATTCCCAGTAGCCCAGCCACAGAGACCTCAGACAACATCAGCCCCGTGGCTAGCCCCGTCCACACAGG
Seq C2 exon
GTTTCTGGTGAGCTTCATGGTCGATGCCCGGGGAGGATCCATGAGAGGAAGTCGTCATAATGGCCTAAGGGTGGTGATCCCTCCCCGGACATGCGCAGCACCCACTCGCATCACCTGCCGCCTGGTTAAGCCCCAGAAGCTAAGCACACCGCCCCCGCTGGCTGAGGAGGAGGGCCTAGCCAGCAGGATCATTGCACTGGGTCCTACGGGGGCCCAGTTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.758 C2=0.184
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=3.0)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGACTGTTGTGATCCG
R:
CTTAACCAGGCGGCAGGTGAT
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]