MmuEX6034895 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23111810-23114170:+
Coord C1 exon
chr8:23111810-23111888
Coord A exon
chr8:23113764-23113861
Coord C2 exon
chr8:23113946-23114170
Length
98 bp
Sequences
Splice sites
3' ss Seq
AGGCCCTTTCTCTTCTGCAGGCA
3' ss Score
9.4
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGTGGAGTCTCCAGCCATCCCAAGGATCCCTTGTGTCACACCTGAGACCGTTGTGATCCGATCTGAAGATCAGGAACAA
Seq A exon
GCATCTAAAGAATATGATGAGGATTCCCTCATTCCCAGCAGCCCGGCCACAGAGACCTCAGACAACATTAGCCCTGTGGCTAGCCCGGTCCACACAGG
Seq C2 exon
GTTCCTGGTGAGCTTCATGGTGGATGCCCGAGGGGGATCCATGAGAGGAAGCCGTCATAATGGCCTCAGGGTGGTGATCCCTCCCCGGACATGCGCAGCACCCACTCGCATCACCTGCCGCCTCGTTAAGCCGCAGAAGCTGAACACGCCACCCCCACTGGCTGAGGAAGAGGGCCTAGCCAGCAGGATCATTGCCCTGGGACCCACGGGGGCCCAGTTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'27-48,'27-44,35-48=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.758 C2=0.258
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.0=3.0)
C2:
PF0079115=ZU5=FE(71.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGAGACCGTTGTGATCC
R:
CAGCTTCTGCGGCTTAACGAG
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types