BtaEX6108245 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026403 | CREBBP
Description
Bos taurus CREB binding protein (CREBBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001164022]
Coordinates
chr25:3065733-3072845:-
Coord C1 exon
chr25:3072757-3072845
Coord A exon
chr25:3067299-3067379
Coord C2 exon
chr25:3065733-3065789
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TATGAGTTTTCCCCACAGACTCTGTGCTGCTATGGGAAGCAGCTGTGTACAATTCCTCGAGATGCTGCCTACTACAGCTATCAGAATAG
Seq A exon
GTATCACTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGGGAGAATGTTACCCTGGGTGACGACCCTTCACAACCCCAGAC
Seq C2 exon
GACAATTTCAAAGGATCAGTTTGAAAAGAAGAAAAATGATACCTTAGATCCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026403-'19-22,'19-21,20-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.321 C2=0.500
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTTCCCCACAGACTCTG
R:
GGTTCAGGATCTAAGGTATCATTTTT
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]