RnoEX0024464 @ rn6
Exon Skipping
Gene
ENSRNOG00000005330 | Crebbp
Description
CREB binding protein [Source:RGD Symbol;Acc:2401]
Coordinates
chr10:11697154-11704789:+
Coord C1 exon
chr10:11697154-11697242
Coord A exon
chr10:11702905-11702985
Coord C2 exon
chr10:11704733-11704789
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TATGAGTTCTCCCCACAGACTTTGTGCTGCTATGGAAAGCAGCTGTGTACAATTCCTCGTGATGCAGCCTACTACAGCTATCAGAATAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCCCAACCTCAGAC
Seq C2 exon
GACAATTTCCAAGGATCAATTTGAAAAGAAGAAAAATGACACCTTAGATCCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005330-'25-26,'25-25,26-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.357 C2=0.500
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCTCCCCACAGACTTTG
R:
GGTTCAGGATCTAAGGTGTCAT
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]