DreEX6099434 @ danRer10
Exon Skipping
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26916080-26918848:+
Coord C1 exon
chr22:26916080-26916168
Coord A exon
chr22:26918589-26918669
Coord C2 exon
chr22:26918792-26918848
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTGTAACTTTATTAGATA
3' ss Score
5.62
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TACGAGTTTTCTCCTCAGACGCTGTGCTGTTACGGCAAGCAGCTCTGCACAATACCCCGAGACGGCACTTACTACAGTTATCAGAACAG
Seq A exon
ATATCATTTCTGTGAGAAATGCTTCAATGAGATCCAGGGAGACAGCGTGACGCTAGGAGATGATCCTGCTCAGCCTCAGAC
Seq C2 exon
CATGATCTCTAAAGACCAGTTTGAAAGAAAGAAGAACGACACATTAGATCCTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609-'21-27,'21-26,22-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.071 C2=0.350
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTTTTCTCCTCAGACGC
R:
GGCTCAGGATCTAATGTGTCGT
Band lengths:
145-226
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]