HsaEX6042053 @ hg19
Exon Skipping
Gene
ENSG00000005339 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:2348]
Coordinates
chr16:3799628-3807377:-
Coord C1 exon
chr16:3807289-3807377
Coord A exon
chr16:3801727-3801807
Coord C2 exon
chr16:3799628-3799684
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TATGAGTTTTCCCCACAGACTTTGTGCTGCTATGGGAAGCAGCTGTGTACCATTCCTCGCGATGCTGCCTACTACAGCTATCAGAATAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCACAGCCCCAGAC
Seq C2 exon
GACAATTTCAAAGGATCAGTTTGAAAAGAAGAAAAATGATACCTTAGACCCCGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005339-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.357 C2=0.625
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
PF0062824=PHD=PU(23.4=55.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTTCCCCACAGACTTTGT
R:
GGTTCGGGGTCTAAGGTATCA
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)