MmuEX6060584 @ mm10
Exon Skipping
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4099675-4107516:-
Coord C1 exon
chr16:4107428-4107516
Coord A exon
chr16:4101558-4101638
Coord C2 exon
chr16:4099675-4099731
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
TATGAGTTCTCCCCACAGACTTTGTGCTGTTACGGAAAGCAGCTGTGTACAATTCCTCGTGATGCAGCCTACTACAGCTATCAGAATAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCACAGAGATCCAGGGCGAGAATGTGACCCTGGGTGACGACCCTTCCCAACCTCAGAC
Seq C2 exon
GACAATTTCCAAGGATCAATTTGAAAAGAAGAAAAATGATACCTTAGATCCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-'34-38,'34-36,36-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.332 C2=0.471
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCTCCCCACAGACTTTG
R:
GGTTCAGGATCTAAGGTATCATTTTT
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types