GgaEX1017555 @ galGal4
Exon Skipping
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12512342-12518503:-
Coord C1 exon
chr14:12518415-12518503
Coord A exon
chr14:12513130-12513210
Coord C2 exon
chr14:12512342-12512398
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TATGAGTTTTCTCCACAGACCTTGTGCTGCTATGGCAAGCAGCTGTGTACTATCCCTCGTGATGCTGCCTATTACAGCTACCAGAATAG
Seq A exon
GTATCACTTCTGTGAGAAGTGTTTCACTGAAATCCAGGGGGAGAATGTCACCCTGGGTGATGACCCTTCCCAGCCTCAAAC
Seq C2 exon
AACCATCTCTAAAGATCAGTTTGAGAAGAAGAAGAATGACACGCTAGATCCTGAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762-'25-29,'25-28,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.667
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTTCTCCACAGACCTTGT
R:
GGCTCAGGATCTAGCGTGTCA
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]