Special

DmeEX6001534 @ dm6

Exon Skipping

Gene
Description
The gene nejire is referred to in FlyBase by the symbol Dmel ej (CG15319, FBgn0261617). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is X:9665442..9687066. Its molecular function is described by 10 unique terms, many of which group under: binding; protein binding; transferase activity, transferring acyl groups; transferase activity, transferring acyl groups other than amino-acyl groups; transcription factor binding. It is involved in the biological process described with 26 unique terms, many of which group under: positive regulation of signaling; behavior; transport; response to temperature stimulus; macromolecule biosynthetic process. 63 alleles are reported. The phenotypes of these alleles manifest in: cellular anatomical entity; epithelial tube; cell projection; intracellular; neuromuscular junction. The phenotypic classes of alleles include: partially lethal; majority die during P-stage; increased mortality during development; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages.
Coordinates
chrX:9673495-9676669:-
Coord C1 exon
chrX:9676512-9676669
Coord A exon
chrX:9674814-9674924
Coord C2 exon
chrX:9673495-9674443
Length
111 bp
Sequences
Splice sites
3' ss Seq
AATCGAACAAAAATCAACAGTCT
3' ss Score
-1.01
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CTTTCCGAAGTCTTTGAGGCGGAGATTGATCCTGTGATGCAGGCACTGGGATATTGCTGCGGCAGGAAGTACACATTCAATCCACAGGTGCTATGCTGCTACGGCAAGCAGCTCTGCACGATTCCGCGGGATGCCAAGTACTACAGCTACCAGAACAG
Seq A exon
TCTAAAGGAATACGGTGTCGCCTCAAATAGATACACCTACTGCCAAAAGTGCTTTAACGACATCCAGGGCGATACGGTCACACTGGGCGACGATCCACTGCAATCGCAAAC
Seq C2 exon
CCAAATCAAAAAGGATCAGTTCAAGGAGATGAAGAACGATCACCTCGAACTGGAGCCGTTTGTCAATTGCCAGGAGTGCGGACGCAAACAGCACCAAATCTGCGTACTCTGGCTGGATTCTATCTGGCCCGGTGGCTTCGTGTGCGATAACTGCCTGAAAAAGAAGAACTCAAAGCGGAAGGAGAACAAGTTCAATGCGAAACGCCTGCCCACCACCAAGCTGGGCGTGTACATAGAGACGCGGGTGAATAATTTCCTCAAGAAGAAGGAGGCTGGTGCCGGCGAGGTGCACATTCGTGTGGTCAGCTCATCGGACAAGTGTGTAGAGGTGAAGCCCGGCATGCGTCGACGATTCGTCGAGCAGGGCGAGATGATGAACGAGTTCCCATACCGAGCCAAAGCGCTCTTTGCCTTCGAGGAGGTGGATGGCATCGATGTGTGCTTCTTTGGCATGCACGTTCAGGAGTATGGATCCGAGTGCCCGGCGCCGAATACGCGGC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261617-'20-12,'20-10,21-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):

C1:
PF060018=DUF902=WD(100=79.2)
A:
NO
C2:
PF082146=KAT11=PU(74.3=73.8)


Main Inclusion Isoform:
FBpp0291862


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
FBpp0071337, FBpp0291863, FBpp0305701


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGGAGATTGATCCTGTGA
R:
GATTTGGTGCTGTTTGCGTCC
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)