BtaEX6025270 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112848294-112852216:+
Coord C1 exon
chr5:112848294-112848382
Coord A exon
chr5:112850189-112850269
Coord C2 exon
chr5:112852160-112852216
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCCGACAGGTA
3' ss Score
10.14
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TTGGAGTTCTCTCCACAGACACTCTGTTGCTATGGCAAACAGTTATGCACAATCCCTCGTGATGCCACTTACTACAGTTATCAGAACAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAAATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAACCTCAAAC
Seq C2 exon
TACAATAAATAAAGAACAATTTTCAAAGAGAAAAAATGACACTCTGGATCCTGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198-'27-28,'27-27,28-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.450
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTCTCCACAGACACTCTG
R:
AGTTCAGGATCCAGAGTGTCA
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]