HsaEX6026976 @ hg38
Exon Skipping
Gene
ENSG00000100393 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr22:41158412-41162779:+
Coord C1 exon
chr22:41158412-41158500
Coord A exon
chr22:41160642-41160722
Coord C2 exon
chr22:41162723-41162779
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCCGACAGGTA
3' ss Score
10.14
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TTGGAGTTCTCTCCACAGACACTGTGTTGCTACGGCAAACAGTTGTGCACAATACCTCGTGATGCCACTTATTACAGTTACCAGAACAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAGATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAGCCTCAAAC
Seq C2 exon
TACAATAAATAAAGAACAATTTTCCAAGAGAAAAAATGACACACTGGATCCTGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100393-'58-61,'58-58,64-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.304 C2=0.463
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTCTCCACAGACACTGT
R:
AGTTCAGGATCCAGTGTGTCA
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains