RnoEX0003435 @ rn6
Exon Skipping
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122870691-122874410:+
Coord C1 exon
chr7:122870691-122870791
Coord A exon
chr7:122872150-122872230
Coord C2 exon
chr7:122874310-122874410
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCCGACAGGTA
3' ss Score
10.14
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TTTCTTTTGCAGTTGGAGTTCTCTCCACAGACTCTGTGTTGCTATGGCAAACAGTTATGCACAATCCCCCGTGATGCTACTTACTACAGTTACCAGAACAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAAATCCAAGGGGAGAGCGTTTCTTTGGGTGATGACCCTTCCCAACCTCAAAC
Seq C2 exon
TACAATAAATAAAGAACAATTTTCCAAGAGAAAAAATGACACACTGGATCCAGAACTGTAAGTAGTTTCCCATGAATTATTGGTATATTCTCTGGCCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190-'25-25,'25-24,26-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTCTGTGTTGCTATGGC
R:
AACAGGCCAGAGAATATACCAAT
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]