MmuEX0016943 @ mm10
Exon Skipping
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81632424-81636234:+
Coord C1 exon
chr15:81632424-81632512
Coord A exon
chr15:81634004-81634084
Coord C2 exon
chr15:81636178-81636234
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCCGACAGGTA
3' ss Score
10.14
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TTGGAGTTTTCTCCACAGACTCTTTGTTGCTATGGGAAACAGTTATGCACAATCCCCCGTGATGCTACTTACTACAGTTACCAGAACAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAAATCCAAGGGGAGAGCGTTTCTTTGGGTGATGACCCTTCCCAACCTCAAAC
Seq C2 exon
TACAATAAATAAAGAACAGTTTTCCAAGAGAAAAAATGACACGTTGGATCCTGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-'38-43,'38-40,39-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.500
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTTCTCCACAGACTCTTTGT
R:
AGTTCAGGATCCAACGTGTCA
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types