HsaEX6026976 @ hg19
Exon Skipping
Gene
ENSG00000100393 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:3373]
Coordinates
chr22:41554416-41558783:+
Coord C1 exon
chr22:41554416-41554504
Coord A exon
chr22:41556646-41556726
Coord C2 exon
chr22:41558727-41558783
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCCGACAGGTA
3' ss Score
10.14
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TTGGAGTTCTCTCCACAGACACTGTGTTGCTACGGCAAACAGTTGTGCACAATACCTCGTGATGCCACTTATTACAGTTACCAGAACAG
Seq A exon
GTATCATTTCTGTGAGAAGTGTTTCAATGAGATCCAAGGGGAGAGCGTTTCTTTGGGGGATGACCCTTCCCAGCCTCAAAC
Seq C2 exon
TACAATAAATAAAGAACAATTTTCCAAGAGAAAAAATGACACACTGGATCCTGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100393-'19-21,'19-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.450
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTCTCCACAGACACTGT
R:
AGTTCAGGATCCAGTGTGTCA
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)