DreEX6068883 @ danRer10
Exon Skipping
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18814102-18817745:-
Coord C1 exon
chr12:18817657-18817745
Coord A exon
chr12:18815473-18815583
Coord C2 exon
chr12:18814102-18814158
Length
111 bp
Sequences
Splice sites
3' ss Seq
GATGTTGGCACATGGTGTAGTTC
3' ss Score
0.44
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
CTTGAATTTTCTCCCCAAACTCTGTGCTGCTATGGGAAACAGTTATGCACTATACCACGAGATGCTGCTTACTTTAGTTATCAGAACAG
Seq A exon
TTCACCAAAATATGGGCTTCTTGCTGACAGGTACCACTTCTGCGAGAAGTGTTTCAATGAGATCCAGGGTGAAACCGTGTCCTTGGGAGACGATCCATCCCAACCTCAAAC
Seq C2 exon
ATCAATCAACAAAGATCAGTTTGAAAAGAAGAAAAATGACACACTTGACCCTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666-'24-29,'24-25,25-29=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.337
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAATTTTCTCCCCAAACTCTGTG
R:
AGCTCAGGGTCAAGTGTGTCA
Band lengths:
146-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]