GgaEX1022539 @ galGal4
Exon Skipping
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49651138-49655151:-
Coord C1 exon
chr1:49655063-49655151
Coord A exon
chr1:49652716-49652796
Coord C2 exon
chr1:49651138-49651194
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGCCTTCTTGCTGACAGGTA
3' ss Score
9.35
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TTGGAGTTCTCGCCACAGACTTTGTGTTGCTATGGCAAACAGCTATGCACAATCCCTCGAGATGCCACTTACTACAGTTACCAGAACAG
Seq A exon
GTATCATTTCTGTGAGAAGTGCTTCAATGAAATCCAAGGGGAGAGCGTTTCTCTGGGAGATGACCCTTCACAACCTCAAAC
Seq C2 exon
CACGATAAACAAAGAACAGTTTTCAAAAAGGAAAAATGATACACTGGATCCTGAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992-'30-33,'30-32,31-33
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.450
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGTTCTCGCCACAGACT
R:
TCAGGATCCAGTGTATCATTTTTCCT
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]