DreEX0030136 @ danRer10
Exon Skipping
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24877272-24884715:-
Coord C1 exon
chr3:24884627-24884715
Coord A exon
chr3:24879097-24879177
Coord C2 exon
chr3:24877272-24877328
Length
81 bp
Sequences
Splice sites
3' ss Seq
TATGGGCTTCTTGCTGACAGGTA
3' ss Score
8.43
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
TTGGAGTTTTCTCCTCAAACTCTGTGCTGCTATGGCAAACAGCTGTGTACCATCCCCCGAGATGCTGCGTACTTCAGTTACCAGAACAG
Seq A exon
GTACCACTTCTGTGAGAAGTGTTTCAACGAAATCCAGGGGGAGAATGTGTCCCTGGGGGACGACCCAACCCAGCCACAAAC
Seq C2 exon
GTCCATCAATAAAGACCAGTTTCAACGTAAGAAGAACGACACCCTCGACCCTGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-'20-27,'20-26,21-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.357 C2=0.500
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTTTCTCCTCAAACTCTGTGC
R:
AGCTCAGGGTCGAGGGTG
Band lengths:
143-224
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]