DreEX6015272 @ danRer10
Exon Skipping
Gene
ENSDARG00000104148 | crebbpb
Description
CREB binding protein b [Source:ZFIN;Acc:ZDB-GENE-050302-102]
Coordinates
chr3:9677168-9679615:-
Coord C1 exon
chr3:9679527-9679615
Coord A exon
chr3:9677351-9677431
Coord C2 exon
chr3:9677168-9677224
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTGGTCTTGTTGCCTGCAGGTA
3' ss Score
10.88
5' ss Seq
GACGTATGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
TATGAGTTTTCACCTCAGACGCTTTGCTGCTATGGCAAACAGCTCTGTACAATCTCCCGGGACGGCACATATTACAGCTACCAAAACAG
Seq A exon
GTATCACTTCTGCGAGAAGTGCTTCAATGAGATTCAGGGCGACAGTGTCACTCTGGGGGACGACCCGACCCAGTCGCAGAC
Seq C2 exon
TATGATATCAAAGGAGCAGTTTGAGAAGAAGAAAAACGACACGTTGGACTCTGAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104148-'20-25,'20-24,21-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.075
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTTTCACCTCAGACGCT
R:
GGTTCAGAGTCCAACGTGTCG
Band lengths:
144-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]