BtaINT0063363 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004383 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr3:50110849-50115055:-
Coord C1 exon
chr3:50114951-50115055
Coord A exon
chr3:50110978-50114950
Coord C2 exon
chr3:50110849-50110977
Length
3973 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTGGACCAATTTGCCTCTAGGCT
3' ss Score
6.94
Exon sequences
Seq C1 exon
AGTAAAAAGAAATTTGAAAGAGAATGTAGAGAGGCAGAGAAGGCACAACAGAGTTACGAAAGATTGGATAATGACACGAATGCAACCAAGGCAGATGTTGAAAAG
Seq A exon
GTAAGAAATAATTCAAGCTGACTTTAATATCAAAATATTATTACTTGCATATGGAGCATAGTTACAATATTCATGTTAGTATTAGCGTTTCTGCAAGAGATACTCTACATCTAATCTAAAATACACAAATATTTGTGTACTTTAAATTACAATTCTGGTCTGAGAAAGTAAACAAAATTAATAATGTCAACTGCATTCAAAGTGCATAGGAAAGATTTAATTGCTAATAGGAATGAGCTTCTATCCTATTCCCCAATAAGACAGAAAGTCTAAGGTATGTTGATAGGGTATGCAGATAGAGGCTGGATAGTGTGCTTCTCAACTTTACAGAAAGGAAAACATGATAAAACTGTCAGAAATGTGATTTATCGCTATTTGTTTATTAGTTCATTCATTCACTCATTTTGGAAAGCTGAATTCTCTCTTGTCATTCACTGAGTCTGGGCCAGAAGTTGTATAACATAACTGTTGGTAGGGTCAGTCCTATAACTGTTGTGGCTTAGCTTTTCCTTCTCCCTTGCTGTACGCTCTTTATCTTAGGATATTTGACACAGTGATAGTGTTGAAATGTTGGAGTTTTGAAATATAGACGAACCTTACTCCGTTCTTTTTGTATATACAAAGGTCCACCATTAGTATATCTTCTCCTTAGAATTTTATAATATTCTATAGCATCAGAAGAAGAAAAAGTAAGGAGAAAGGAATACTTTATTTTCTACCTTCCATTTGCTTTACCAATTTTTTAAAAACCCTAAAATCGTAAACATTTTAGGTTACAGTTACCTTAAAGATCTTCTGCTGTAACTTATGCTTTTATCTTGTCTACCCTATTTTTAATAACCTACACCTCTTATGATAGTAAGTTCCCTGTCACTGGAAATATAGAAACTTAAAATAGCCTGTTCATTAAAAAAAAAAAAAAATTACCATTTCCTTATATTGACCCCACTCATCTCCCTGTTCACTTTCAGTTTGTAAAAAAACTGAAATAACAAATCTGTTTTTCTCATAAATAGGTATTTAGATATTTTTAGCAGATTCTCTACCCATAGATGAATTGTCTGTTTCTTCAACTATTCTACATGTGAAATATCTTCAAGTTACCTTTCACTATGACTACTTCCATTTAGATATCATTTAATTAACCAATATTCCACTTAAAGTATGTTGTATATAGTTCAATTTGATCAGTTCTGAGTTTGATTACCTTGCTTGTTTTGAAACTAAATTTATATTAATTACACCCTAAATGTATATTGGTTTTTTGACAGTTATACCTTAAATGTATATTGTGTATTTGGGGTTTTTTTTGTAGGGTATACATAATACCCTAAATGTATATTGGTTGTTCGGATTGACTTTCAGTGAGTTTATGGTTAACTGAAATCCCCATGTCTTTTCATATATGAGGAGTTACAAGTTTATGTGTCTCAGACAGAACTTGTACTGTTGACATTTTAAATGCATATGCTACATCTATGTCAATTACTAGATTTGATCCTGCTGTTAAGGTTTTTGGATCCCTGAATTTGATCACCCACTATATTAATTTCCTTCTGCTGCTGCTGCTAAGCTGCTTCAGTCGTGTCCGGCTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTAGGTTGCCATTTCCTTCTCCAATGCGTGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCATGTCCGACTCCTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAAGAGTACTGAAGTTGGGTGCCATTGCCTTCTAGGCATCATGTAATACACACAGTGTGTTAGCATTACTTGATAAAAATGTGGACCACAACACTTGTAAACAGAACTGTTTTATATGTGAGAGTCAGGAGTCTTCCTTGCTGGTTGACACTGACTCAAGAACTCTTCTGATACATCAATATAATACATAGTTTGTGTATTAAACAAATTAGGTTTAACTGGACTCTCATTTTTAGCTTATTCATTTCTATCTATAAAGATATCTTTAGAGACTGTTCATACATCTTGAAATCTAGATATAACATGTCTACTAGTTAGTTTGACCTAACTAGTTCAGAACTTTAATGTTTATATCTTCCTTTTTTTTTTTTTTCCCTTGTTTGCAGCCCCTTTAATTATTAGAGAATTGGGAAAACTTTGAGGATTTACTTTAGAATCTGGAGAGTAGAGGAATTCTGTTTTCAGTGTCTAGGAAGGGAAGGAAACATAGATTTAAGTACTGATACAATTAAAAACAAAAACAAAACAAAGGTGAGGAGGGAGCAGGCCAATTAGTGTATCTTCCTGAAGAAAAGGAAGGCAGTTGCACAACATTGAATATACACAACACTATCAAACTACACACTTAAAAATAATTAAGATGGGTACATTTTATGTGTATTGTGTATTTTGCCACAATTAATTTTTTTTTTAATTTAGTGAAATATAAAATAGAAAAAGAAAGCAAAGGCAGTAGATGTGAAAACCAGAATATGTCAGGGAAGGTGTCAGTTGTTTTAGTTTCTAGTCTTACACTTTTTCATAACCTGTTGGAGTCCTTCATCTAGGCTTTAGGTATCATAGCCAGTGACTTGAAATAGGAGGCGCCTCCCCTGAAAGAAAGAACCGTGTGGGTAGGGAATACTTGGAATCCTTCATTTCATCATAGTTTGTAAGAGGAGGGAGAAAAGGGAAAGGAGTGAATGAATGTGTTCTTAGAGTCTCAGGTTAGAACTTGAAGTGTATTTTTCTTTAGAAATACTTTAGGAAATGGTGTTTAGTTTCCATAGTACTTATTTATTTTAATCTTCAAGAACACCATGAATTAAATGGATATTTGTGGACTCATTTGAAATCTTGACTACCGTGTATATTGGTATGTCAGTTTGTTTCTGAGTTCAGAAGAACTAACTTGTGGATCTACTGTTAGAAGGTTCGGGATTACAATTATAAAAACTAGGATTAGAATAATGAAGTGTATTCACAATGTGCTTTTATTATTTTCAGAGAAGTCTCATGTAACAATTTATAGCTTGGAATACTAAGAAACTGTATTTGGAGTTTGGAATATTGAGTATTAACTGAGTTTGGAATACTGAGTGTTGGAATATTGAGAAAAGAGTTCAATTCTTATTTTTTTTTCCTATTAATTTATAAGCAATTGAGAAAATTGTTTAGATTACCTCCAGTAAACCTGGAATTAATGATTTGTGTTGTTTGTATGCAGATGTTCTCATTAATATAGATGGCATTAATGTGACTCACTGGAAAAGCATTTCTGTAAGAGCTTGAGATGAAGAGAACTATATTCTAATTAAGCATTCCTTAAAGTATCAATATCTGTTGTTTTGTATAGAGGTAGAAAGTATTGTTAAGCGTTACATTATCCCCAAATTACATTTTTACTGTTACCTGGATTCATTGTGGTTCTGAGTTGAATGTAACTGGATTATATTTGAAGAGAAGTTTTACTGATAACTTTGTAACTGTCAAAATTACTCCTGATGTTTTTTTTCCTTTTCTGATTAAATGCTTACTGACAAACCACAATGTTGTCATTTATTTAATTAGAAAAACCCATTCGTTAAGAAATTTTATTCAAATGGTTTATTACAAGGGAGAGGATTTATTATTGTAGTAAGAGAAAGGGAATATTGCAACAGGGCGACTGGCCATAACAGAGGGGACATATGTATACCTATGGCTGATTCATGTTGATATTTGACAGAAAACAACAAAATTCTGGAAAGCAATTCTCCTTCAATTAAAAAATAAAGATCTGTAAGCATCTCCTTTACTTTTAAATGATATCAGTAGTTAGAAAAAGCCTAGTTTTAGTATAACTTCTAAAAAGTGAATTAACTGTGATTTTGTTGCTCCTCTTCTCATTGGTAATGATTTGGACCAATTTGCCTCTAG
Seq C2 exon
GCTAAACAGCAGTTGAATCTACGTACGCATATGGCTGATGAAAATAAGAATGAATATGCTGCACAATTACAAAACTTTAATGGAGAACAGCACAAACATTTCTATGTAGTGATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004383:ENSBTAT00000005756:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]