HsaINT0065332 @ hg38
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr1:93529652-93530883:+
Coord C1 exon
chr1:93529652-93529756
Coord A exon
chr1:93529757-93530754
Coord C2 exon
chr1:93530755-93530883
Length
998 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCGACCATTTTGCCCCTAGGCC
3' ss Score
9.8
Exon sequences
Seq C1 exon
AGTAAAAAGAAGTTTGAAAGAGAATGTAGAGAGGCAGAAAAGGCACAACAGAGTTATGAAAGATTGGATAATGATACTAATGCAACCAAGGCAGATGTTGAAAAG
Seq A exon
GTAAGAAATACTCCAAACCAACTTTAATGTCAAAATATTATTATTTGCATAAGGAAAGTAGTCACGACATTTGTATGACTACAGTATTAGGATTTACTTGAGATACACTGTATCTAAGTCTAAAATATACAAATATTTGCCAACTTTAAATTATACGTATTGGTCTGAGAAAGTAATATATGTTAATTTATTACAATATCTTAGCTGCATTCAAATTTAGAGGAAAGACGTAGTTGCTACTGGGATTGAGTTTTTAGCCTATTCCAAAATAGGTTAGAAAGCTAAGATGTGTTGATGGGGTAATAATTAGTTAGAGAATAACTGTTGTAATTTGACTTTGTACAAGAGATCAAGAGGAACAGAACTGTATTCTAAATAAGCATTCCTTAATTTGACTTTGTACAAGAGATCAAGAGGAACAGAACTGTATTCTAAATAAGCATTCCTTAAAGTATCTGTGGTTCTACACATTGGTGGAAACACTGTTGAATGTTGCATTATTCAACAATCATATTATTATTTAGTTTCACTGTGATTTAAGTTCCATATTTTAGTTGGATATAGTTGGATCATAAATGTTTTACTGTTAACTTTTTTAACAATCTGAAAATATTCCTAAAGCTACCTGTTTTTCTCTTCTGATTAAAAGCACACTGTTTCAAGCTATAATGTTTTCATTTGTTTGTTTTTTTATCTGGATTTGGTAAGGAGAGTCTATATTAGAATGTCTTATTGCTATCAGGGAATACTATTGTAATGAGAGAGGGAAGAATATTGTAATAAGGAGACCACTCTGACAGTAAGATCTGCAGGTGTCTTTAAATATAAAATATATTTTAAATGATATTAATAGTTCAAAAAAGTTATGCCACGTCATTATTCTTTTGATGTCAGGTGTTGGCTTCTTCATTGATAAAATCTAGTTTTAGTATAATTTTCAAAAAAGTGAATTGCTGTGATTTTGTTGTTGATAATAATTTCGACCATTTTGCCCCTAG
Seq C2 exon
GCCAAACAGCAGTTGAATCTGCGTACGCATATGGCCGATGAAAATAAAAATGAATATGCTGCACAATTACAAAACTTTAATGGAGAACAACATAAACATTTTTATGTAGTGATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942:ENST00000370253:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=0.502
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGAAAGAGAATGTAGAGAGGCA
R:
CTTGTAAATCTGAGGAATCACTACAT
Band lengths:
224-1222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development