RnoINT0061842 @ rn6
Intron Retention
Gene
ENSRNOG00000013798 | Fnbp1l
Description
formin binding protein 1-like [Source:RGD Symbol;Acc:1305386]
Coordinates
chr2:226710504-226713665:-
Coord C1 exon
chr2:226713561-226713665
Coord A exon
chr2:226710633-226713560
Coord C2 exon
chr2:226710504-226710632
Length
2928 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGGACCATTTTTGTCTGTAGGCC
3' ss Score
7.87
Exon sequences
Seq C1 exon
AGTAAAAAGAAATTTGAAAGAGAATGTAGAGAGGCTGAGAAAGCACAGCAGAGTTATGAAAGACTGGATAATGATACAAATGCAACCAAGGCAGATGTTGAAAAG
Seq A exon
GTAAGAAACCTAAACTTGCTTTTAAAAAATATGATTACTGGTGCGTATTCATTGCATACAGTCAATAATCCTACTTTGATAACCACATATTGCATGCATGGAAAGAAGACACAGCTTTTGCATCATTATTGTATCTAAATCTAAAATATGCAGATGTTGCCTAATTGGTCTGAGAAGGAAAAACGATAACTTAATGCCTTAGTTGCAATCATAATGCTCAGGAGAAACTGGCTACTAGGATTCTTTTCTTCCCTATTCCTATACTGAATAAAAAGACCAAGTTAAAACCATAAAGTGTGCAGTTGGGTGTGACCAGTGTACCTCAGCAGCTCTACAGAACATAGCCCCGAACTGTCCCCTTGTTACCTATTGCTCAGTGAAAGCCTTGTCACTGACTCTGAGCTGGCTAGCCTGGAGTGTAATCTGCTGCTAGGTCTGATAGTCGAGTTGGTCTTGTAACTGCTGTTTCTTAGTGTCCTTTGTTAATTGATAGAGTGCAGTTAGCCCCTCTCCCCCTTCTTTATTATTTCCTTATATAGGCTGTACTCATCTCTTTAACATTTTGAGTTACATAAACAAATGTCAAATACATTTTAAATAATTGTTTTGAATAATAATTCTGAAACTGGCTGTAATATGTGTGGTCTGATCAGTTCTGATTTTTATTACCTCCCTTGTCTGAGCACTAAATTCTTGCTAATATGGCCTGAGTGTTTATGGTCTAGTAACCATGTTGTGTGAACTGACTCCTACTGAGTTCATGATTATCTGGAATCCTTGTCTTTACATGTGTGTTGGTATGAAGATGTGCCTCTCATGACTTAGCATGTATCTGAAGTTTGTATGGACACCTTTATCCATTATTAGCTTTGATTCTGCTGTTTAAGTTTTTATATCCTAATTTTGATTATATAATTTCCTTTTCAACATTATGCCATATTAATAATTGAATAATGTGTTACTTGATAGTATTGTGAGTAACATCACTATATTGTACATGGGACACGCCTCAAAGGTTGACATTCACTTTTAAACACTTCTTTGAGTCATTAGCAAATAATGGTTATTCAAATTTATGTCACAGGCAATTTAAAGTTACTTGTTTAGTGGACTCACATTTAACATCTTCAATTTGTCCACAGGGATTAGCTTTGCATATTCACTAAGCATCTTGAAACATAGATATAATATGGCTCCTAGTTAATTTGTCCTAACTTTTTCAGAACTTCAGCATTCATGGTTTAATGTTCAGTTATTTGAAATCTATAATTGTCTGAGCTTGTGCCCTCATTCCTTTATATACCTGCTGAAACCTCCATCCTAGCCCAGGGAATTCACAGCCAGTAGCTGGGACCTGGACGAGTTCCCCATGACAGTTCAGGAGGACTTGAGGCTAGGACTCAGAATCTTTGTCCCACTTTGTGGTTTATTGGAGAAGGAGAAAAGAGATGAGTGTGAGGAATCATTCCAGGCTGGAACCTCAGGTTTTGCTTGTTTCACTTTTTTCTCTCTAGAAGTACTTTGTGTTTTGGTTCATAGTCTTTAGTTCTTACAGTATTTACTTAGTCTTTAGTTCTTACAGTATTTACTTGCAGGAACTTCTAATGTGCCTTTTATGAAATAAGGTTTGTGACTTATCTATGGTCTTGGCTACCCTGCTTCCATAGTCAGTTTATTTCTGAGTTAACAAGGTGTGGTTATAGACTAGTGTGAGAAGCTAAGTAACTGTATCTGTAAAAGTTAGCATCCTAAGAGTAAGTGAGAGATAGATAGGGCTGGGAATGAGGATCACGCCAGAGCACTTGTCAGCAAGGGTAAAGCCTTTATGTTCAATCCTTAGCAAAAGAAAGGGAAAAAAAAATAGCGGGACTTATCAATACCCAGTGTGCTGTGTAATTTATAGCCCTGATGTGTACATAGCACACAAGGCACTCGCACTTCTTCCCACCCTCCCTCTCTTCCTCTCTTTTTGCTATGTTGTGCCCAGGTTGCGCTGCTACTCTGACCCTCTGGCCTCAGCCTTATGTCTATGTGAGACTGCTGGTTTGCAGTGTTGAATCTGGGGAGCCAATACTTATTTTGTTTATTTCCTGTTTTAGATCAGTGTCTTAGTTAGGGTTTTACTGCTGTGACCAAGGCACCTCTTATAAGGACAACATTTAATTGGGGCTGGCTTATAGGTTCAGAGAAGTTTAGTCCGTTATCAAGGTGAGGTCTTGGCAGCATCCAGGCACACATGGGGCTGGAGGAGCTGAGAGTTCTACATCTTCATCCAAAGACAGACAGGAGAAGACTGGCTTCCAGGGAGCTAGGATGAGGATCTTAAAGCCCACGCCCATAATGATACACTTCCTCCAACAAGGTCACACCTCCTAATAGTGCCCTGTGCCAAGTATATTCAAACCAGCACAGTCAGCTAGGGAGTTTGTTTAGCTTATCCTCATTGTGTTAGAACTAACAGTCTTACTTATATTCTTGTCAGTGAAGATAATATTCCTTTGACTTATGCAGAACTATTTTAAATAAGTAGCTCTGGTTTTACAGAGATTGAAACACTGTTGAGTATTTCAGTGCTCAAAATATATTTTAATCATTTATATGTATTATGATTTTAGTTTCATAATTCTAATAGGGCAAAGAAATGTTTCACTACTTTTTTATAATCAGAAATAATTCTGGTTTCCTTCTGTTTAAAAATGTACTGCTCAAGGTATAACATCATTTATTATTTTCTGTGTGAATTTTATAAGTAGACTATCTAGATTATTGAAAAGAAGAGAACTATTATGGTTGTTGTCAGAGGAGACTGTGTAAGATATGATAGCATTAGCTGTCGGCTGTCTGTTGACAAAGTCTAGATTTGATATAGTTTTCAGAAAAATGAATTACTTTGTTTTTGGCAATCATTTGGACCATTTTTGTCTGTAG
Seq C2 exon
GCCAAGCAGCAGCTGAACCTCCGCACGCACATGGCTGACGAGAATAAAAACGAATACGCCGCGCAGCTGCAGAACTTCAACGGGGAGCAGCACAAGCATTTCTACGTGGTGATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013798:ENSRNOT00000019244:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]