GgaINT0035268 @ galGal4
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:HGNC:20851]
Coordinates
chr8:12828113-12828859:-
Coord C1 exon
chr8:12828755-12828859
Coord A exon
chr8:12828242-12828754
Coord C2 exon
chr8:12828113-12828241
Length
513 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGTAACACTTTCTTACTAGGCA
3' ss Score
4.42
Exon sequences
Seq C1 exon
AGTAAAAAGAAATTTGAGAGAGAATGCAGAGAGGCAGAGAAGGCGCAGCAAAGCTATGAAAGACTGGACAATGACACTAATGCGACAAAGGCTGATGTTGAAAAG
Seq A exon
GTAAGAGCAGTGCCATGTTTGTTTTTTCCTCTCCCTTTATTATAAATATATTTTATATTTACCGTACTGGAACATCATCCTTCGTATAATATTATGTATAAAATATGCTTGCTTACTGTGTGCAAAATCAGAGGGTAAAATGTACATGGAGTATGCTTCATCGATGATTCTTAGGATGATGCTGAGTCACTTTTCTTCCTGTGGTAGGCAAACTCACGGGTATTTTATAGTATCTATGTAGTCTAATTCAGTCTCTTTTATGTTTTTTGCATATGTATTTGAGCAGTGTGGCTAAGGGAGCTTAAATAACCACTACTCTCTCTCTGTGTATAACAAATTAGGTCTCTTGGCTGTCTGTATAAATTAAGGCTCACATTCCTTTTATTGTAAGGATGTAAGTTTTGATGATGACTACGATTAGTGTTTTTACGTAGTGGCAAAATAAATTATAATACTGCTATGTATCACTGAAAAGCTCAAGACATGTTTGAACCAGTAACACTTTCTTACTAG
Seq C2 exon
GCAAAGCAACAGTTAAACCTGCGTACACATATGGCTGATGAAAACAAAAATGAATATGCTGCACAGCTACAGAATTTTAATGGTGAACAGCACAAACACTACTACATTGTCATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.729 A=NA C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAAATTTGAGAGAGAATGCAGA
R:
CTTGTAAATCTGAGGAATGACAATGT
Band lengths:
230-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]