DreINT0069255 @ danRer10
Intron Retention
Gene
ENSDARG00000020131 | fnbp1l
Description
formin binding protein 1-like [Source:ZFIN;Acc:ZDB-GENE-040801-155]
Coordinates
chr8:15024072-15024459:+
Coord C1 exon
chr8:15024072-15024176
Coord A exon
chr8:15024177-15024330
Coord C2 exon
chr8:15024331-15024459
Length
154 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
GACCAATCATTCTGTCCTAGGCA
3' ss Score
6.47
Exon sequences
Seq C1 exon
AGTAAAAAGAAGTTTGAACGGGAATGCAAAGAGGCGGAGAAATCGCAGATGATGTACGAGAGGTTAGACAATGACATCAACGCCACAAAGTCAGAAGTCGAAAAG
Seq A exon
GTATTCCTGTTCTTCACTTGAATTCTTACAGTTATTGACTGAATCTTGTTCTGATAACATTGTAAAACATCACTTGCTGTTGGGGCTAATACTGGAAGCCTCGGCTGTATTCCTGAGGTATTAGTAATACAGATGACCAATCATTCTGTCCTAG
Seq C2 exon
GCAAAGTCCCAGCTGTATCTGAGACAACACATGGCGGAGGAGAGCAAGAACGAGTACGCGGCCCAGTTGCAGAACTTTAATGGTGAACAGTGGAAACATTTCAACCAGGCCATCCCTCAGATATTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020131:ENSDART00000045038:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAAAAAGAAGTTTGAACGGGAA
R:
AGTGAATATCTGAGGGATGGCCT
Band lengths:
234-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]