GgaINT0035268 @ galGal3
Intron Retention
Gene
ENSGALG00000005850 | FNBP1L
Description
NA
Coordinates
chr8:14578436-14579182:-
Coord C1 exon
chr8:14579078-14579182
Coord A exon
chr8:14578565-14579077
Coord C2 exon
chr8:14578436-14578564
Length
513 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAGTAACACTTTCTTACTAGGCA
3' ss Score
4.42
Exon sequences
Seq C1 exon
AGTAAAAAGAAATTTGAGAGAGAATGCAGAGAGGCAGAGAAGGCGCAGCAAAGCTATGAAAGACTGGACAATGACACTAATGCGACAAAGGCTGATGTTGAAAAG
Seq A exon
GTAAGAGCAGTGCCATGTTTGTTTTTTCCTCTCCCTTTATTATAAATATATTTTATATTTACCGTACTGGAACATCATCCTTCGTATAATATTATGTATAAAATATGCTTGCTTACTGTGTGCAAAATCAGAGGGTAAAATGTACATGGAGTATGCTTCATCGATGATTCTTAGGATGATGCTGAGTCACTTTTCTTCCTGTGGTAGGCAAACTCACGGGTATTTTATAGTATCTATGTAGTCTAATTCAGTCTCTTTTATGTTTTTTGCATATGTATTTGAGCAGTGTGGCTAAGGGAGCTTAAATAACCACTACTCTCTCTCTGTGTATAACAAATTAGGTCTCTTGGCTGTCTGTATAAATTAAGGCTCACATTCCTTTTATTGTAAGGATGTAAGTTTTGATGATGACTACGATTAGTGTTTTTACGTAGTGGCAAAATAAATTATAATACTGCTATGTATCACTGAAAAGCTCAAGACATGTTTGAACCAGTAACACTTTCTTACTAG
Seq C2 exon
GCAAAGCAACAGTTAAACCTGCGTACACATATGGCTGATGAAAACAAAAATGAATATGCTGCACAGCTACAGAATTTTAATGGTGAACAGCACAAACACTACTACATTGTCATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005850:ENSGALT00000009401:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.442
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGAAATTTGAGAGAGAATGCAGA
R:
CTTGTAAATCTGAGGAATGACAATGT
Band lengths:
230-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]