MmuINT0065320 @ mm10
Intron Retention
Gene
ENSMUSG00000039735 | Fnbp1l
Description
formin binding protein 1-like [Source:MGI Symbol;Acc:MGI:1925642]
Coordinates
chr3:122560833-122563939:-
Coord C1 exon
chr3:122563835-122563939
Coord A exon
chr3:122560962-122563834
Coord C2 exon
chr3:122560833-122560961
Length
2873 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGGACCATTTTTGCCTGTAGGCC
3' ss Score
7.79
Exon sequences
Seq C1 exon
AGTAAAAAGAAGTTTGAAAGAGAATGTAGAGAAGCGGAGAAAGCACAGCAGAGTTATGAGAGGTTGGATAATGACACCAATGCCACCAAGGCAGATGTTGAAAAG
Seq A exon
GTAAGGACTCTAAACTCGCTATAAAACAGTATTACTACTGGAGCGTAGTCATTGCGTACAGCCAACAATCCTACTTTGATAACCAAATATTACATGCATGGAAAGAAGGCACACCTTTTGCGTCATTATTGTATCTAAAGCTAAAATATGCAAATGTTGTTTACTTGGTCTGAGAAGGAAAAAATGATAACATAATGCCTTAGTTGCATTCATAATGCTCAGGATAAACTGGCTGCTAGGGGTTTTTTCTTCCTTATTCCTAAATTGAATAAAAAGACTGAGATACAGCCCGAGTATGCTAATTGGGTGTGACTCAGTAGTCCTCTTCAGCAGCTCTACAGAATGTAAGCATTGAGCTATCACCATGGTACCTGGTTACTCAATGAAATTCTTGTCACTGATTCTGAGCTGGCTATTCTGTAGCGTAATTTGCTGAGAGATTGATTGGTCTTGTAACTGCTGTTTCCTAGTTTCTCCTCTGTTAGTTGATAGGGTTCAGTTAGCTCCCACCCCACCCCATCTTTATTATTTCCTTATATAGGCTGTACTCATCTCTGTTTCACATTTTGAGTTACATAAACAAATGTCAAATACATTTTTAAATAATAGTTTTGAATAATAATTCTGAAACTGACTGTAACACTGGTGTGTCTGATCTTGATTACCTCCCTTATCTGAGCACTGAGTTCTTGCTAATATGACGTGAGTGTTTATGATCTAGGCAACCATGTTTGAACTGACTCCCATGGCTGAGTTCATGATTATCTTGTCTTTACATGTGTATTGGTATGAGAATGTGCCTCTTATAACTTAAAGACTGTATTTAAAATTTGTATGGACATCTTTATCTATTATGAGCTTTGATCCTGCTATTTAAGTTTTTATATCCTAATTTTGATTATATGATTTCCTTTCCAGCATTATGCCATATTCATAATTGAAGAATGTGTTACTCGATAGTATTGTGAGTAACAGCACTATTTTGTACATGGGACATGTCTCAAAGTTGACATTCACCTTTAAACACTTCTTTGAGTCATTATCAAATAATGGTTATTCAAATTTGTGTCACAGGCAATTGAAAGTTACTTGTTTAGTGGATTCACATTTAACCCTTTAATTTGTCTACAAGGATTAGCTTTACATAGTCACTAAGCATCGGGAAACCGAGATATAAGACGGCTGCTAGTTAGTTTATCCTAACTTTCAAGATTTCAGTGTTCATGGTTTAATGTTCAGTTATTTGAAATCTCTTTATTATTAGAAAATTAGACTAGGCTTCAATTGTTTGAGCTTGTAGCCTTATTCTTTTTTATTCGCTGCCGAAACCTCCATCCTAGCTGGGACCTGGAGGAGTGTCCCCTGGCAGGTCAGGAGGACTTGAGGCTAGGACTCGGAATCTTTGTCCCACTTTATAGTTTATGGTAGAAGGAGAATGTTCTAGGCTGGAACCTCAGGTTTTGTCTCATTTCATTTTTTTCCTCTGTAGAAATACTTTGTACTTTGACTCATAGTATTTAGTTTCCATAGTATTTACTTGCAGGAACTTGTGATGTGCCGTGGATTAAATAAGGTTTTGTGGGCTTATCTATGATCTTGGCTACCCTGCTTCCATAGTCAGTTTATTTCTGAATTAACAAGATAGAGTTATAAACTAGTGTTAGAAGCTAAGTAACTGCATCTGTAAAAGCTAGCATCCTAAGAGTGAGGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGACTGGGAATGAGGATCAAACCAGAGTGCTTGTCAGCAAGGATAAAGCCCTTACGTTCAATCCTTAGCAAAAGAAAGGAAAAAAAAATAGTGTGCTGTGTAACTCATAGCCCTGATGTATACATAGCACACACGGCACTCGCACTTCTTCCCACCCTCCCTCTCTTCCTTTACTTTTGCCATGTTGTGCTCAGGTTGTGCTGCAACTCTGTTGCCTCTCTGGCCTCAGCCTTTGCATGTACATGAGACTGCTGGTGTGCAGTGTTGAATCTGTGGAGACCAATTCTTACTTCCTAATTTAGATCAGAGTCTAATTAGTTAGTGTTTTACTCTTGTGAACAGATACTATGACCAAGACAATGCTTATAAGGACATTTAATTGGGGCTGGCATATAGGTTTGGAAGTTCAATCCATTATCATCAAGGCATGAGCTTGGCAGCTTCCAGGCAGATGTGGGGCTGGAGGAGCTAAGAGTTCTACATTTTCATCCAAAGGCGGACAGGAGAAGACTGGCTTCCAGGGAGCTCGGATGAGGGTCTTAAAGCCCATGTCCATATTGATAGACTTCCTCCAACAAGGCCACACCTTCTCTAATAGTGCCACTTCCTGGGCCAAGCATATTCAAACCAACCCAATCAGTTAGGAAATTTGTTTAGCTTATACTCACTGTGTTAGAACTAACAGTTTTACTTTTATTCTTGTCAGAGAAGATAATACTCCTTTGCCCTTGTGCAAGAAATTAAAGGCAGAACTATTTTAAATAAGTACCTCTGGTTTCATAGAGATTGAAACACTGTTGAGTTTTACAGTACCCAACGTTTTAGTCATTTACATCTATTATGATTTTAGTTTCATTTATTATTTTCTGTGTGAATTTTATAAGTAGACTATTTATATTATTGAATAGAGCAGAGCTCTCATAGGGACAGAGGGATTGTCATAAGGAGACTGTAAGATCTGGAAGCATTTTCATTAGCTGTTGGGTTATCTATAACACAATTTAGGTTTGGTATAATTTTCAGAAAAATGAATTACTTTATTTTTGGCAATCATTTGGACCATTTTTGCCTGTAG
Seq C2 exon
GCCAAACAGCAGTTGAACCTTCGTACGCATATGGCTGATGAGAATAAAAATGAATATGCTGCACAGCTGCAAAATTTTAATGGAGAACAGCACAAACATTTTTATGTGGTAATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039735:ENSMUST00000162409:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.711 A=NA C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types