HsaINT0065332 @ hg19
Intron Retention
Gene
ENSG00000137942 | FNBP1L
Description
formin binding protein 1-like [Source:HGNC Symbol;Acc:20851]
Coordinates
chr1:93995209-93996440:+
Coord C1 exon
chr1:93995209-93995313
Coord A exon
chr1:93995314-93996311
Coord C2 exon
chr1:93996312-93996440
Length
998 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTCGACCATTTTGCCCCTAGGCC
3' ss Score
9.8
Exon sequences
Seq C1 exon
AGTAAAAAGAAGTTTGAAAGAGAATGTAGAGAGGCAGAAAAGGCACAACAGAGTTATGAAAGATTGGATAATGATACTAATGCAACCAAGGCAGATGTTGAAAAG
Seq A exon
GTAAGAAATACTCCAAACCAACTTTAATGTCAAAATATTATTATTTGCATAAGGAAAGTAGTCACGACATTTGTATGACTACAGTATTAGGATTTACTTGAGATACACTGTATCTAAGTCTAAAATATACAAATATTTGCCAACTTTAAATTATACGTATTGGTCTGAGAAAGTAATATATGTTAATTTATTACAATATCTTAGCTGCATTCAAATTTAGAGGAAAGACGTAGTTGCTACTGGGATTGAGTTTTTAGCCTATTCCAAAATAGGTTAGAAAGCTAAGATGTGTTGATGGGGTAATAATTAGTTAGAGAATAACTGTTGTAATTTGACTTTGTACAAGAGATCAAGAGGAACAGAACTGTATTCTAAATAAGCATTCCTTAATTTGACTTTGTACAAGAGATCAAGAGGAACAGAACTGTATTCTAAATAAGCATTCCTTAAAGTATCTGTGGTTCTACACATTGGTGGAAACACTGTTGAATGTTGCATTATTCAACAATCATATTATTATTTAGTTTCACTGTGATTTAAGTTCCATATTTTAGTTGGATATAGTTGGATCATAAATGTTTTACTGTTAACTTTTTTAACAATCTGAAAATATTCCTAAAGCTACCTGTTTTTCTCTTCTGATTAAAAGCACACTGTTTCAAGCTATAATGTTTTCATTTGTTTGTTTTTTTATCTGGATTTGGTAAGGAGAGTCTATATTAGAATGTCTTATTGCTATCAGGGAATACTATTGTAATGAGAGAGGGAAGAATATTGTAATAAGGAGACCACTCTGACAGTAAGATCTGCAGGTGTCTTTAAATATAAAATATATTTTAAATGATATTAATAGTTCAAAAAAGTTATGCCACGTCATTATTCTTTTGATGTCAGGTGTTGGCTTCTTCATTGATAAAATCTAGTTTTAGTATAATTTTCAAAAAAGTGAATTGCTGTGATTTTGTTGTTGATAATAATTTCGACCATTTTGCCCCTAG
Seq C2 exon
GCCAAACAGCAGTTGAATCTGCGTACGCATATGGCCGATGAAAATAAAAATGAATATGCTGCACAATTACAAAACTTTAATGGAGAACAACATAAACATTTTTATGTAGTGATTCCTCAGATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137942-FNBP1L:NM_001024948:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=NA C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGAAAGAGAATGTAGAGAGGCA
R:
CTTGTAAATCTGAGGAATCACTACAT
Band lengths:
224-1222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)