BtaINT0077907 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24131486-24134605:-
Coord C1 exon
chr2:24134476-24134605
Coord A exon
chr2:24132287-24134475
Coord C2 exon
chr2:24131486-24132286
Length
2189 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATT
5' ss Score
5.73
3' ss Seq
CTTTCTCCCCCCGTCTCCAGTGT
3' ss Score
10.2
Exon sequences
Seq C1 exon
TGTGGTTTCTTCAAGAGAAATAAGAAAGATCACTATGATGCCACATATCACAAGGCTGAGATCCATGCTCAGCCATCTGATAAAGAGAGGCTTACTTCTGATGCGTAGTATTGATCTACTTCTGTAATTG
Seq A exon
GTAATTGATCAATGTTTTTTAATTGCTAGCTGTGGAACCTGCTATGGTTGTGGTGGCTAACTTTAAAAGCAACAGCTTGCTGTGTGTGTCCCATTAACAGACGTTTTCCAAATGTCCACACTGGCTTGCCTTGCTTGAATTTATTTCATTTATTTCACTTGAAAGCTTAGTGTTGTTTTTTTTTTAAGTGCACAAAGAATCTTTCGTTGCAGGTGAGCTACTTTTTGTTGTTAATAGACATCACCCACAGCAATGAAGAAAACTGCTATCTACGTACACATAGGAGGTGTTAGACCTCTACAGTAGACCGGTTTCCCACGTGTTGTTAATCTAGTATGTAGCTTACCACTTGGAATTTCAAAAATGCATAAGAAATCATCCCAGATTTCTTGTCCATTTTGGAATTTCCCACAGAAGTTTGTGTTGACTGCCTAATTAACCTGTTGCATGTTGGAAACATTGTGTTTCTCTTTAAGAGAGGGCTTTCTCACTGTCATCTTTTTGATTTTCGTGCTATAAAATGATGGGGCAAGGCTTCGGAATGCTTTTATTGTTGCTCAGAAATTGTTTTATGCTGGCTAAGCATGCAACTTCCTTTCCCTGCATATCTACTACAAGTCAAAGACCATTACAACAAACTCTTCACTACTGGCGTGACAGACATTATGGTTGACTTCAGAAGATGATTCTTTGCCAACATGGCCTTCAGTTTACAAAAGTTTAATATAAAAATGCTGTGGACAGTTTATTCAAAATGTTGTAATGGAGTTTGACCTTGTTCCATGTTCCTAGAAATTTTTTTCAGCCCTGGGTCTCAGCTGATTTTAAGTTCATGTTTGGCTTCTCTTATTTGTAACTCCATGGAAACAGGAATTGGCAGCAATTCCTTTTTCCATTTCTGTGGGCACCAGAGGGTAGAATTACCCCTGTAATCCCTTTCCATGGCCCTGTCATGACGAATCCCAGCATTTCCATTTCAGTTTATGTATCACCCCGATTTCTTCTTTGTTTAAATGGGGCAGTAGTCACACTATGTGACAGATAGGTGTTTTGGCTTTTTTGCAGAAAATAGAAAAGACCTTAGAACAAAAATTCTTGTCCCATTTTCCTCACCGATTTAGTGATAAATTTGTGATAAATAGTGATAAATTTGTACATAATTTTATTTTGCCCCATGCCATTTTTATAGCTTAACATCATTCAAAACAAATGTTCTATGCCTATTGATGTCACATAGTAAACACATTAATCAACTATTCTAAGTATCTTCCTCATCCATCTTTTATCTGCATTTAAAAATTAAAGACATATTTTTAAAAAATATATATATATTTTATTAAAAAAATTCAGTCTGACTTAAGAATTTCCAGGTATGTTCCCAATAAAAACCTACTTTGGATAAGATTGAATATGTTTTTACAGATTAATAAAATATATATTCATTAATAATCTAAGTGTAAGTGCTGTATTTTTGCCAAAAAGAAAAGAAATTAGAGGATGCTCTGAAATTCAATCTAGTGATAGTTTCTCAAATTCTTTGTGGTACATGAATGATTTTATTGCAGGACACAGTCACTGCATGATTTATTAATGAAACAGCTTAGTTTGGAAGCTTCATTTGGAAATCCAGGCAGTATAAATTACATCTTAGCTATTAAGAAAGATGTACTGGAGCCTAGAAGGAGAGGAGATTAAATCACCCATTTCAAGTAGTAATTTGTAAAATATTTGTGACCTGATTTCCATTTTGTTAGTGGAAGAGGGGCATGGAATAATCTTTGGTTTATGACCTTGAAAAAAAGTTGTTCTTGAAATTAACATGATGTTCTAGTAATCTGAAAGTTAGATCTTTTACATATAATATGGTGATTATAAAAAAATGGAAGCACTGTTTCATAAACTCTTCAACTCTTAGAGGTAACTAACATTGCTATAATAAGACGGAAGGACAAGATGGGAAAAGGGACTTTTCTTCCAGTTTTACAGCTGTTCTCTTCTGTTTATCCTCACCGGCTATTACTATTTTTGACCTATTAGTTCCTTCTTAAAAGAAAACCATGGCTTTTATTCTTTGTCCCAGTCTAAATTTAGGCATAGCTGAACAGAAAGCTTAGATATTACCATCTAGTGGACTTGCCCTTCTTGGAATTACTTAATTTGTGTCTGTTTCTTTCTCCCCCCGTCTCCAG
Seq C2 exon
TGTGGATTCTTTAAACGCTCTAGGTACGATGATAGCGTTCCCCGATACCACGCTGTAAGGATCCGGAAAGAAGAGCGAGAGATCCCAGATGAAAAATATAATGATAACCCTGAAAAAAAACAGTGGATCACAAAGTGGAATGAAAATGAAAGCTACTCCTAGGGAGGCCAGAAAAGCTTCACAGTATCCAAACTGCTTTATTTTTTCCCCAACCCAGACACTCAGATGGATTGAAAAACCTGTTCAATATCTGAATACTGATTTCAGACAGACTGCACAACAGTACGGGCCTACAGTTTTAACTGTGGACATTGTTACGTGGCCCGAGGCTCCTGTTTTGCACAGCCAAATTGAAGGCTGTTGGAATGGATTTTTCTTTAACTGCCTTAATTTAACGTTCCGGGTTGCCTTTGTTTTTGACTTACTTGTGCTGGGGAAGGGCCTGCCCGGTTACTCTTACGCGACATCCTTCCAAAGGTGTAGCTGGAAGAAGGCACCGTGACCCCTGCGCCAGAGTGACCGTCCCAGCCTTGGCACCACCTCTGCCAGCGTTCTTCTCAAAGGATGGGAGAACATGCCAGTTAACTGTCCTGCATCACAACCCTATGCCATCAGGGTAACTGTGTTCAAACTAAAGTGCTCCCATAAATTAAATGTGCAATAGAAGGTAATGTTGCCATCCTGCCATCTTTTTCCATTTCCTAGACGTGTGAATACCTGCTCACGCCAAATACACACAGGTTTCATTTCCCTTTCACTAAAACACACAGGCATAACAGATTTGAATGCTAGTTATACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF151761=LRR19-TM=PD(45.7=88.9),PF0035715=Integrin_alpha=PD(86.7=36.1)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]